Journal Articles Published In 2020

Martina L. Reichmuth, Rico Hömke, Kathrin Zürcher, Peter Sander, Anchalee Avihingsanon, Jimena Collantes, Chloé Loiseau, Sonia Borrell, Miriam Reinhard, Robert J. Wilkinson, Marcel Yotebieng, Lukas Fenner, Erik C. Böttger, Sebastien Gagneux, Matthias Egger, Peter M. Keller (2020) Natural Polymorphisms in Mycobacterium tuberculosis Conferring Resistance to Delamanid in Drug-Naive Patients, Antimicrobial agents and chemotherapy 64(11), NLM (Medline), doi:10.1128/AAC.00513-20

Martina L. Reichmuth, Rico Hömke, Kathrin Zürcher, Peter Sander, Anchalee Avihingsanon, Jimena Collantes, Chloé Loiseau, Sonia Borrell, Miriam Reinhard, Robert J. Wilkinson, Marcel Yotebieng, Lukas Fenner, Erik C. Böttger, Sebastien Gagneux, Matthias Egger, Peter M. Keller (2020) Natural Polymorphisms in Mycobacterium tuberculosis Conferring Resistance to Delamanid in Drug-Naive Patients, Antimicrobial agents and chemotherapy 64(11), NLM (Medline), doi:10.1128/AAC.00513-20

Angela M. Parcesepe, Kathryn Lancaster, E. Jennifer Edelman, Raquel DeBoni, Jeremy Ross, Lukoye Atwoli, Mpho Tlali, Keri Althoff, Judicaël Tine, Stephany N. Duda, C. William Wester, Denis Nash (2020) Substance use service availability in HIV treatment programs: Data from the global IeDEA consortium, 2014-2015 and 2017, PLoS ONE 15(8 August), Public Library of Science, doi:10.1371/journal.pone.0237772

Gabriela Patten, Thanyawee Puthanakit, Catherine C. McGowan, Kara Wools-Kaloustian, Rohan Hazra, Jorge A. Pinto, Daisy Machado, Regina Succi, Annette H. Sohn, Helena Rabie, Beverly Musick, Mary Ann Davies (2020) Raltegravir use and outcomes among children and adolescents living with HIV in the IeDEA global consortium, Journal of the International AIDS Society 23(7), John Wiley and Sons Inc., doi:10.1002/jia2.25580

Nanina Anderegg, Jonas Hector, Laura F. Jefferys, Juan Burgos-Soto, Michael A. Hobbins, Jochen Ehmer, Lukas Meier, Marloes H. Maathuis, Matthias Egger (2020) Loss to follow-up correction increased mortality estimates in HIV–positive people on antiretroviral therapy in Mozambique, Journal of Clinical Epidemiology 128, p. 83-92, Elsevier Inc., url, doi:10.1016/j.jclinepi.2020.08.012

Sophie Desmonde, Anne M Neilan, Beverly Musick, Gabriela Patten, Kulkanya Chokephaibulkit, Andrew Edmonds, Stephany N Duda, Karen Malateste, Kara Wools-Kaloustian, Andrea L Ciaranello, Mary-Ann Davies, Valériane Leroy, IeDEA (2020) Time-varying age- and CD4-stratified rates of mortality and WHO stage 3 and stage 4 events in children, adolescents and youth 0 to 24 years living with perinatally acquired HIV, before and after antiretroviral therapy initiation in the paediatric IeDEA Gl, Journal of the International AIDS Society 23(10), p. e25617, pubmed, doi:10.1002/jia2.25617

Gabriela Patten, Thanyawee Puthanakit, Catherine C. McGowan, Kara Wools-Kaloustian, Rohan Hazra, Jorge A. Pinto, Daisy Machado, Regina Succi, Annette H. Sohn, Helena Rabie, Beverly Musick, Mary Ann Davies (2020) Raltegravir use and outcomes among children and adolescents living with HIV in the IeDEA global consortium, Journal of the International AIDS Society 23(7), John Wiley and Sons Inc., url, doi:10.1002/jia2.25580

Julie Jesson, Sophie Desmonde, Constantin T. Yiannoutsos, Gabriela Patten, Karen Malateste, Stephany N. Duda, Nagalingeswaran Kumarasamy, Marcel Yotebieng, Mary-Ann Ann Davies, Beverly Musick, Valeriane Leroy, Andrea Ciaranello (2020) Weight-for-age distributions among children with HIV on antiretroviral therapy in the International epidemiology Databases to Evaluate AIDS (IeDEA) multiregional consortium, BMC Research Notes 13(1), p. 249, BioMed Central Ltd., url, doi:10.1186/s13104-020-05081-7

IeDEA and COHERE in EuroCoord Cohort Collaboration (2020) All-cause mortality after antiretroviral therapy initiation in HIV-positive women from Europe, Sub-Saharan Africa and the Americas, AIDS 34(2), p. 277-289, Lippincott Williams and Wilkins, pubmed, doi:10.1097/QAD.0000000000002399

Andreas D. Haas, Yann Ruffieux, Leigh Luella van den Heuvel, Crick Lund, Andrew Boulle, Jonathan Euvrard, Catherine Orrell, Hans W. Prozesky, Nicki Tiffin, Kathryn L. Lovero, Mpho Tlali, Mary Ann Davies, Milton L. Wainberg (2020) Excess mortality associated with mental illness in people living with HIV in Cape Town, South Africa: a cohort study using linked electronic health records, The Lancet Global Health 8(10), p. e1326-e1334, Elsevier Ltd, doi:10.1016/S2214-109X(20)30279-5

Frédérique Chammartin, Cam Ha Dao Ostinelli, Kathryn Anastos, Antoine Jaquet, Ellen Brazier, Steven Brown, Francois Dabis, Mary Ann Davies, Stephany N. Duda, Karen Malateste, Denis Nash, Kara Wools-Kaloustian, Per M. Von Groote, Matthias Egger (2020) International epidemiology databases to evaluate AIDS (IeDEA) in sub-Saharan Africa, 2012-2019, BMJ Open 10(5), BMJ Publishing Group, doi:10.1136/bmjopen-2019-035246

Nisha Jacob, Brian Rice, Emma Kalk, Alexa Heekes, Jennie Morgan, Samantha Brinkmann, James Hargreaves, Marsha Orgill, Andrew Boulle (2020) Consolidating strategic information to monitor progress against the UNAIDS 90-90-90 targets: evaluating the operational feasibility of an electronic HIV testing register in Cape Town, South Africa, BMC health services research 20(1), p. 720, doi:10.1186/s12913-020-05517-7

Leigh F. Johnson, Themba Mutemaringa, Themba Mutemaringa, Alexa Heekes, Alexa Heekes, Andrew Boulle, Andrew Boulle (2020) Effect of HIV Infection and Antiretroviral Treatment on Pregnancy Rates in the Western Cape Province of South Africa, Journal of Infectious Diseases 221(12), p. 1953-1962, Oxford University Press, url, doi:10.1093/infdis/jiz362

Nisha Jacob, Brian Rice, Emma Kalk, Alexa Heekes, Jennie Morgan, James Hargreaves, Andrew Boulle (2020) Utility of digitising point of care HIV test results to accurately measure, and improve performance towards, the UNAIDS 90-90-90 targets, PloS one 15(6), p. e0235471, NLM (Medline), url, doi:10.1371/journal.pone.0235471

Chloé Loiseau, Daniela Brites, Miriam Reinhard, Kathrin Zürcher, Sonia Borrell, Marie Ballif, Lukas Fenner, Helen Cox, Liliana K. Rutaihwa, Robert J. Wilkinson, Marcel Yotebieng, E Jane Carter, Alash'le Abimiku, Olivier Marcy, Eduardo Gotuzzo, Anchalee Avihingsanon, Nicola Zetola, Basra Doulla, Erik C. Böttger, Matthias Egger, Sebastien Gagneux (2020) HIV coinfection is associated with low fitness rpoB variants in rifampicin-resistant Mycobacterium tuberculosis , Antimicrobial Agents and Chemotherapy, American Society for Microbiology, url, doi:10.1128/aac.00782-20

Olga Tymejczyk, Ellen Brazier, Kara Wools-Kaloustian, Mary Ann Davies, Madeline Dilorenzo, Andrew Edmonds, Rachel Vreeman, Carolyn Bolton, Christella Twizere, Nicollate Okoko, Sam Phiri, Gertrude Nakigozi, Patricia Lelo, Per von Groote, Annette H. Sohn, Denis Nash (2020) Impact of Universal Antiretroviral Treatment Eligibility on Rapid Treatment Initiation Among Young Adolescents with Human Immunodeficiency Virus in Sub-Saharan Africa, The Journal of infectious diseases 222(5), p. 755-764, NLM (Medline), url, doi:10.1093/infdis/jiz547

Kathrin Zürcher, Carl Morrow, Julien Riou, Marie Ballif, Anastasia Sideris Koch, Simon Bertschinger, Xin Liu, Manuja Sharma, Keren Middelkoop, Digby Warner, Robin Wood, Matthias Egger, Lukas Fenner (2020) Novel approach to estimate tuberculosis transmission in primary care clinics in sub-Saharan Africa: protocol of a prospective study, BMJ open 10(8), p. e036214, NLM (Medline), doi:10.1136/bmjopen-2019-036214

Kathryn Dovel, Shari L. Dworkin, Morna Cornell, Thomas J. Coates, Sara Yeatman (2020) Gendered health institutions: examining the organization of health services and men’s use of HIV testing in Malawi, Journal of the International AIDS Society 23(S2), John Wiley and Sons Inc., doi:10.1002/jia2.25517

Martina L. Reichmuth, Rico Hömke, Kathrin Zürcher, Peter Sander, Anchalee Avihingsanon, Jimena Collantes, Chloé Loiseau, Sonia Borrell, Miriam Reinhard, Robert J. Wilkinson, Marcel Yotebieng, Lukas Fenner, Erik C. Böttger, Sebastien Gagneux, Matthias Egger, Peter M. Keller (2020) Natural Polymorphisms in Mycobacterium tuberculosis Conferring Resistance to Delamanid in Drug-naïve Patients, Antimicrobial Agents and Chemotherapy, Antimicrob Agents Chemother, url, doi:10.1128/AAC.00513-20

Patience Nyakato, Mary Ann Davies, Karl Gunter Technau, Geoffrey Fatti, Helena Rabie, Frank Tanser, Andrew Boulle, Robin Wood, Brian Eley, Shobna Sawry, Janet Giddy, Nosisa Sipambo, Louise Kuhn, Lee Fairlie (2020) Virologic response to efavirenz-based firstline antiretroviral therapy in children with previous exposure to antiretrovirals to prevent mother-to-child transmission, PLoS ONE 15(5), Public Library of Science, doi:10.1371/journal.pone.0233693

Leigh F. Johnson, Mark Patrick, Cindy Stephen, Gabriela Patten, Rob E. Dorrington, Mhairi Maskew, Lise Jamieson, Mary-Ann Davies (2020) Steep Declines in Pediatric AIDS Mortality in South Africa, Despite Poor Progress Toward Pediatric Diagnosis and Treatment Targets, Pediatric Infectious Disease Journal 39(9), p. 843-8, url, doi:10.1097/inf.0000000000002680

Chloé Loiseau, Daniela Brites, Miriam Reinhard, Kathrin Zürcher, Sonia Borrell, Marie Ballif, Lukas Fenner, Helen Cox, Liliana K. Rutaihwa, Robert J. Wilkinson, Marcel Yotebieng, E Jane Carter, Alash'le Abimiku, Olivier Marcy, Eduardo Gotuzzo, Anchalee Avihingsanon, Nicola Zetola, Basra Doulla, Erik C. Böttger, Matthias Egger, Sebastien Gagneux (2020) HIV coinfection is associated with low fitness rpoB variants in rifampicin-resistant Mycobacterium tuberculosis, Antimicrobial Agents and Chemotherapy, Antimicrob Agents Chemother, url, doi:10.1128/AAC.00782-20

Elizabeth Zaniewski, Cam H Dao Ostinelli, Frédérique Chammartin, Nicola Maxwell, Mary-Ann Davies, Jonathan Euvrard, Janneke van Dijk, Samuel Bosomprah, Sam Phiri, Frank Tanser, Nosisa Sipambo, Josephine Muhairwe, Geoffrey Fatti, Hans Prozesky, Robin Wood, Nathan Ford, Matthew P Fox, Matthias Egger (2020) Trends in CD4 and viral load testing 2005 to 2018: multi-cohort study of people living with HIV in Southern Africa., Journal of the International AIDS Society 23(7), p. e25546, pubmed, doi:10.1002/jia2.25546

Kathleen Kehoe, Andrew Boulle, Priscilla R Tsondai, Jonathan Euvrard, Mary Ann Davies, Morna Cornell (2020) Long‐term virologic responses to antiretroviral therapy among HIV‐positive patients entering adherence clubs in Khayelitsha, Cape Town, South Africa: a longitudinal analysis, Journal of the International AIDS Society 23(5), John Wiley and Sons Inc., url, doi:10.1002/jia2.25476

Jaroslaw Harezlak, Samiha Sarwat, Kara Wools-Kaloustian, Michael Schomaker, Eric Balestre, Matthew Law, Sasisopin Kiertiburanakul, Matthew Fox, Diana Huisin‘t Veld, Beverly Sue Musick, Constantin Theodore Yiannoutsos (2020) PS-SiZer map to investigate significant features of body-weight profile changes in HIV infected patients in the IeDEA Collaboration, PLoS ONE 15(5), Public Library of Science, doi:10.1371/journal.pone.0220165

Kunjal Patel, Colette Smith, Intira Jeannie Collins, Ruth Goodall, Elaine J. Abrams, Annette H. Sohn, Thahira J. Mohamed, Russell B. Van Dyke, Pablo Rojo, Kara Wools-Kaloustian, Jorge Pinto, Andrew Edmonds, Irene Marete, Mary Paul, Harriet Nuwaqaba-Biribonwoha, Valériane Leroy, Mary Ann Davies, Rachel Vreeman, Nicky Maxwell, Venessa Timmerman, Charlotte Duff, Lynne Mofenson, Linda Gail Bekker, Marissa Vicari, Shaffiq Essajee, Martina Penazzato, Intira Jeannie Collins, Kara Wools-Kaloustian, Mary Ann Davies, Valériane Leroy, Ruth Goodall, Kunjal Patel, Colette Smith, Rachel Vreeman, Amy Slogrove, Paige Williams, Siobhan Crichton, George Seage, Lineo Thahane, Peter N. Kazembe, Bhekumusa Lukhele, Lumumba Mwita, Adeodata Kekitiinwa-Rukyalekere, Sebastian Wanless, Mogomotsi S. Matshaba, Intira Jeannie Collins, Ruth Goodall, Colette Smith, Tessa Goetghebuer, Claire Thorne, Josiane Warszawski, Luisa Galli, Sybil Geelen, Diana M. Gibb, Carlo Giaquinto, Magdalena Marczynska, Laura Marques, Filipa Prata, Luminita Ene, Liubov Okhonskaia, Pablo Rojo, Antoni Noguera-Julian, Lars Naver, Christoph Rudin, Gonzague Jourdain, Ali Judd, Alla Volokha, Jorge Pinto, Vanessa Rouzier, Regina Succi, Annette H. Sohn, Azar Kariminia, Thahira J. Mohamed, Marcel Yotebieng, Andrew Edmonds, Patricia Lelo, Rita Lyamuya, Irene Marete, Patrick Oyaro, Kara Wools-Kaloustian, Andrew Boulle, Kennedy Malisita, Geoffrey Fatti, Andreas D. Haas, Mary Ann Davies, Sophie Desmonde, Fatoumata Dicko, Valériane Leroy, Mark J. Abzug, Paige Williams, Murli Purswani, George Seage, Russell B. Van Dyke, Ellen Chadwick, Elaine J. Abrams, Chloe Teasdale, Harriet Nuwagaba (2020) Outcomes of second-line antiretroviral therapy among children living with HIV: a global cohort analysis, Journal of the International AIDS Society 23(4), John Wiley and Sons Inc., doi:10.1002/jia2.25477

Eliane Rohner, Lukas Bütikofer, Kurt Schmidlin, Mazvita Sengayi, Mhairi Maskew, Janet Giddy, Katayoun Taghavi, Richard D. Moore, James J. Goedert, M. John Gill, Michael J. Silverberg, Gypsyamber D'Souza, Pragna Patel, Jessica L. Castilho, Jeremy Ross, Annette Sohn, Firouze Bani-Sadr, Ninon Taylor, Vassilios Paparizos, Fabrice Bonnet, Annelies Verbon, Jörg Janne Vehreschild, Frank A. Post, Caroline Sabin, Amanda Mocroft, Fernando Dronda, Niels Obel, Sophie Grabar, Vincenzo Spagnuolo, Eugenia Quiros-Roldan, Cristina Mussini, José M. Miro, Laurence Meyer, Barbara Hasse, Deborah Konopnicki, Bernardino Roca, Diana Barger, Gary M. Clifford, Silvia Franceschi, Matthias Egger, Julia Bohlius (2020) Cervical cancer risk in women living with HIV across four continents: A multicohort study., International journal of cancer 146(3), p. 601-609, Wiley-Liss Inc., pubmed, doi:10.1002/ijc.32260

Emma Kalk, Alexa Heekes, Ushma Mehta, Renee de Waal, Nisha Jacob, Karen Cohen, Landon Myer, Mary-Ann Davies, Gary Maartens, Andrew Boulle (2020) Safety and Effectiveness of Isoniazid Preventive Therapy in HIV-Positive Pregnant Women on Art: An Observational Study using Linked Population Data., Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, pubmed, doi:10.1093/cid/ciz1224

Mark N. Lurie, Kipruto Kirwa, Julia Callaway, Morna Cornell, Andrew Boulle, Angela M. Bengtson, Mariette Smith, Natalie Leon, Christopher Colvin (2020) Quantifying the HIV treatment cascade in a South African health sub-district by gender: retrospective cohort study, Tropical Medicine and International Health 25(2), p. 186-192, Blackwell Publishing Ltd, url, doi:10.1111/tmi.13334

Shani de Beer, Emma Kalk, Max Kroon, Andrew Boulle, Meg Osler, Jonathan Euvrard, Venessa Timmerman, Mary Ann Davies (2020) A longitudinal analysis of the completeness of maternal HIV testing, including repeat testing in Cape Town, South Africa, Journal of the International AIDS Society 23(1), John Wiley and Sons Inc., url, doi:10.1002/jia2.25441

Priscilla R. Tsondai, Annette H. Sohn, Sam Phiri, Kombatende Sikombe, Shobna Sawry, Cleophas Chimbetete, Geoffrey Fatti, Michael A. Hobbins, Karl Günter Technau, Helena Rabie, Jonathan Bernheimer, Matthew P. Fox, Ali Judd, Intira J. Collins, Mary Ann Davies, Christopher Hoffmann, Michael Vinikoor, Robin Wood, Andrew Boulle, Geoffrey Fatti, Sam Phiri, Janet Giddy, Cleophas Chimbetete, Brian Eley, Olatunbosun Faturiyele, Michael Hobbins, Matthew Fox, Hans Prozesky, Karl Technau, Shobna Sawry (2020) Characterizing the double-sided cascade of care for adolescents living with HIV transitioning to adulthood across Southern Africa, Journal of the International AIDS Society 23(1), John Wiley and Sons Inc., url, doi:10.1002/jia2.25447

Meg Osler, Morna Cornell, Nathan Ford, Katherine Hilderbrand, Eric Goemaere, Andrew Boulle (2020) Population-wide differentials in HIV service access and outcomes in the Western Cape for men as compared to women, South Africa: 2008 to 2018: a cohort analysis., Journal of the International AIDS Society 23 Suppl 2(S2), p. e25530, John Wiley and Sons Inc., pubmed, doi:10.1002/jia2.25530

Tawanda Makusha, Heidi van Rooyen, Morna Cornell (2020) Reframing the approach to heterosexual men in the HIV epidemic in sub-Saharan Africa., Journal of the International AIDS Society 23 Suppl 2(S2), p. e25510, John Wiley and Sons Inc., pubmed, doi:10.1002/jia2.25510

Helen Bell Gorrod, Richard Court, Michael Schomaker, Gary Maartens, Richard A. Murphy (2020) Increased Mortality with Delayed and Missed Switch to Second-Line Antiretroviral Therapy in South Africa, JAIDS Journal of Acquired Immune Deficiency Syndromes, p. 1, Ovid Technologies (Wolters Kluwer Health), doi:10.1097/qai.0000000000002313

Helen Bell-Gorrod, Matthew P Fox, Andrew Boulle, Hans Prozesky, Robin Wood, Frank Tanser, Mary-Ann Davies, Michael Schomaker (2020) The Impact of Delayed Switch to Second-Line Antiretroviral Therapy on Mortality, Depending on Failure Time Definition and CD4 Count at Failure., American journal of epidemiology, pubmed, doi:10.1093/aje/kwaa049